PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01803.80
Common NameJCGZ_21052
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 733aa    MW: 79923.7 Da    PI: 6.5063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01803.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07306326526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  Jcr4S01803.80 306 PCPDFRK-GACRRGDMCEYAHG 326
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.2E-1640180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1645180IPR020683Ankyrin repeat-containing domain
CDDcd002041.49E-1386165No hitNo description
PROSITE profilePS5029716.38887180IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-887155IPR020683Ankyrin repeat-containing domain
SMARTSM002480.287117IPR002110Ankyrin repeat
PROSITE profilePS5008811.247122157IPR002110Ankyrin repeat
SMARTSM002480.0086122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035649336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MCCGSERLKP SLTPTLPLIS FEESRQANID MNHLTVETED TFASLLELAA NNDVEGFKRW  60
IERDPLCVDE VGLWYGRQKG SKQMVNQHRT PLMVAATYGS IGVIKLVLSV SDADVNFSCG  120
LDNSTALHCA ASGGAVNVID AVKLLLAAGA DPKLVDANGN CPIDVIVVPP NLQGVKFTLK  180
ELLATDGSVV DHNLRISTAS SNSISPPPSP SVENGSPLST SDSPIKSKLN DAPVSSASEK  240
KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVE  360
ELRPLYVSTG SAVPSPRSST SGANAVDFAQ AMSLLPGSPS PVSVMSPSQF TPPMSPSANG  420
MSHSSMAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DYSLLQDFDL QQQQQQLLNE  480
LSSITQPSLS NNSLNRSGRM KTLTPSNLDD LFSAESSSPR YADQALAAAV FSPTHKSTVL  540
NQFQQQSSML SLINTNFSPK NVDHPLMQAS FASGRMSPRN MEPISPMSSQ VSMFSQREKQ  600
QQQFRSLSSR ELGSNSTAIV GSPVNSWSKW GSSNGKADWT VSADDFGKLR RSNSFELGNG  660
EEPDLSWVQS LVKESPTEMK EKLTKPISTG DATVASSSGG MNMNSQIDSV DHAVGAWMEQ  720
LQIDQHKLVA QQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086113.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_012086112.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A067K2I30.0A0A067K2I3_JATCU; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]